Software

pavo

pavo is an R package that provides a cohesive framework for handling spectral data and addressing complex questions in sensory ecology, while at the same time combining with R’s modular core for comprehensive analysis.

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phenotools

phenotools provides functionality for inputting phenomic data sets; merging data sets into a single phenomic data set based on a common set of taxa; annotating characters based on fuzzy text searching/trait ontologies (see image below); filtering overlapping phenomic characters and taxa (e.g. merging taxa into supraspecific terminals); visualizing similarities in character description; and outputting phenomic data sets to common phylogenetic data formats for downstream analysis.

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